Li H, Cieslak M, Salo T, Shinohara RT, Oathes DJ, Davatzikos C, Satterthwaite TD, Fan Y Uncovering functional connectivity patterns predictive of cognition in youth using interpretable predictive modeling , Proc Natl Acad Sci U S A, 122(42: e2505600122): 2025,1-9

Tasian GE, Maalouf NM, Harper JD, Sivalingam S, Logan J, Al-Khalidi HR, Lieske JC, Selman-Fermin A, Desai AC, Lai H, Kirkali Z, Scales CD Jr, Fan Y Validation of an Automated CT Image Analysis in the Prevention of Urinary Stones with Hydration Trial , J Endourol: 2025,1-7

Tingting Chen, Hongming Li, Hao Zheng, and Yong Fan dFCExpert: Learning Dynamic Functional Connectivity Patterns with Modularity and State Experts , IEEE Trans. on Medical Imaging: 2025

Zheng H, Li H, Fan Y SurfNet: Reconstruction of Cortical Surfaces via Coupled Diffeomorphic Deformations , IEEE Trans Med Imaging, 44(12): 2025,4865-4877

Li Y, Joaquim MR, Pickup S, Song HK, Zhou R, Fan Y Learning ADC maps from accelerated radial k-space diffusion-weighted MRI in mice using a deep CNN-transformer model , Magn Reson Med, 91(1): 2024,105-117

Li H, Srinivasan D, Zhuo C, Cui Z, Gur RE, Gur RC, Oathes DJ, Davatzikos C, Satterthwaite TD, Fan Y Computing personalized brain functional networks from fMRI using self-supervised deep learning , Med Image Anal, 85(102756): 2023,1-13

Li H, Fan Y MDReg-Net: Multi-resolution diffeomorphic image registration using fully convolutional networks with deep self-supervision , Hum Brain Mapp, 43(7): 2022,2218-2231

Jiao Z, Li H, Xiao Y, Aggarwal C, Galperin-Aizenberg M, Pryma D, Simone CB 2nd, Feigenberg SJ, Kao GD, Fan Y Integration of Risk Survival Measures Estimated From Pre- and Posttreatment Computed Tomography Scans Improves Stratification of Patients With Early-Stage Non-small Cell Lung Cancer Treated With Stereotactic Body Radiation Therapy , Int J Radiat Oncol Biol Phys, 109(5): 2021,1647-1656

Yin S, Peng Q, Li H, Zhang Z, You X, Fischer K, Furth SL, Fan Y, Tasian GE Multi-instance Deep Learning of Ultrasound Imaging Data for Pattern Classification of Congenital Abnormalities of the Kidney and Urinary Tract in Children , Urology, 142: 2020,183-189

Zheng Q, Itkin M, Fan Y Quantification of Thoracic Lymphatic Flow Patterns Using Dynamic Contrast-enhanced MR Lymphangiography , Radiology, 296(1): 2020,202-207