Anafi RC, Francey LJ, Hogenesch JB, Kim J CYCLOPS reveals human transcriptional rhythms in health and disease , Proceedings of the National Academy of Sciences of the United States of America, 114(20): 2017,5312-5317
Hollis HC, Sharma A, Sheehan PW, Maggi LB, Weber JD, Hammarlund JA, Bennett DA, Menon V, *Musiek ES, *Anafi RC Reconstructed cell-type-specific rhythms in human brain link Alzheimer's pathology, circadian stress, and ribosomal disruption , Neuron, 113: 2025,1-17
Li SY, Hammarlund JA, Wu G, Lian JW, Howell SJ, Clarke RB, Adamson AD, Gonçalves CF, Hogenesch JB, *Anafi RC, *Meng QJ. Tumor circadian clock strength influences metastatic potential and predicts patient prognosis in luminal A breast cancer , Proc Natl Acad Sci U S A, 121: 2024,e2311854121
Anafi RC, Kayser MS, Raizen DM Exploring phylogeny to find the function of sleep , Nature Reviews. Neuroscience, 20(2): 2019,109-116
Anafi RC, Lee Y, Sato TK, Venkataraman A, Ramanathan C, Kavakli IH, Hughes ME, Baggs JE, Growe J, Liu AC, Kim J, Hogenesch J Machine learning helps identify CHRONO as a circadian clock component , PLoS Biology, 12(4): 2014,e1001840
Ruben MD, Wu G, Smith DF, Schmidt RE, Francey LJ, Lee YY, Anafi RC, Hogenesch JB A database of tissue-specific rhythmically expressed human genes has potential applications in circadian medicine , Science Translational Medicine, 10(458): 2018,eaat8806
Zhang R, Podtelezhnikov AA, Hogenesch JB, Anafi RC Discovering biology in periodic data through Phase Set Enrichment Analysis (PSEA) , Journal of Biological Rhythms, 31(3): 2016,244-257
Krishnaiah SY, Wu G, Altman B, Growe J, Rhoades SD, Coldren F, Venkataraman A, Olarerin-George AO, Francey LJ, Mukherjee S, Girish S, Selby CP, Cal S, Er U, Sianati B, Sengupta A, Anafi RC, Kavakli IH, Sancar A, Baur JA, Dang CV, Hogenesch JB, Weljie AM Clock regulation of metabolites reveals coupling between transcription and metabolism , Cell Metabolism, 25(4): 2017,961-974.e4
Ben-Zvi D, Meoli L, Abidi WM, Nestoridi E, Panciotti C, Castillo E, Pizarro P, Shirley E, Gourash WF, Thompson CC, Munoz R, Clish CB, Anafi RC, Courcoulas AP, Stylopoulos N Time-Dependent Molecular Responses Differ between Gastric Bypass and Dieting but Are Conserved Across Species , Cell Metabolism, 28(2): 2018,310-323.e6
Cal-Kayitmazbatir S, Kulkoyluoglu-Cotul E, Growe J, Selby CP, Rhoades SD, Malik D, Oner H, Asimgil H, Francey LJ, Sancar A, Kruger WD, Hogenesch JB, Weljie A, *Anafi RC, *Kavakli IH CRY1-CBS binding regulates circadian clock function and metabolism , The FEBS Journal, 288(2): 2021,614-639