Anafi Ron C, Francey Lauren J, Hogenesch John B, Kim Junhyong: CYCLOPS reveals human transcriptional rhythms in health and disease. Proceedings of the National Academy of Sciences of the United States of America : 2017.
Krishnaiah Saikumari Y, Wu Gang, Altman Brian J, Growe Jacqueline, Rhoades Seth D, Coldren Faith, Venkataraman Anand, Olarerin-George Anthony O, Francey Lauren J, Mukherjee Sarmistha, Girish Saiveda, Selby Christopher P, Cal Sibel, Er Ubeydullah, Sianati Bahareh, Sengupta Arjun, Anafi Ron C, Kavakli I Halil, Sancar Aziz, Baur Joseph A, Dang Chi V, Hogenesch John B, Weljie Aalim M: Clock Regulation of Metabolites Reveals Coupling between Transcription and Metabolism. Cell metabolism 25 (4): 961-974.e4,2017.
Wu G, Anafi RC, Hughes ME, Kornacker K, Hogenesch JB: MetaCycle: an integrated R package to evaluate periodicity in large scale data. Bioinformatics 32 (21): 3351-3353,2016.
Zhang Ray, Podtelezhnikov Alexei A, Hogenesch John B, Anafi Ron C: Discovering Biology in Periodic Data through Phase Set Enrichment Analysis (PSEA). Journal of biological rhythms 31 (3): 244-57,2016.
Arnardottir Erna S, Nikonova Elena V, Shockley Keith R, Podtelezhnikov Alexei A, Anafi Ron C, Tanis Keith Q, Maislin Greg, Stone David J, Renger John J, Winrow Christopher J, Pack Allan I: Blood-gene expression reveals reduced circadian rhythmicity in individuals resistant to sleep deprivation. Sleep 37 (10): 1589-600,2014.
Anafi Ron C, Lee Yool, Sato Trey K, Venkataraman Anand, Ramanathan Chidambaram, Kavakli Ibrahim H, Hughes Michael E, Baggs Julie E, Growe Jacqueline, Liu Andrew C, Kim Junhyong, Hogenesch John B: Machine learning helps identify CHRONO as a circadian clock component. PLoS biology 12 (4): e1001840,2014.
Deckard Anastasia, Anafi Ron C, Hogenesch John B, Haase Steven B, Harer John: Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data. Bioinformatics (Oxford, England) 29 (24): 3174-80,2013.
Anafi Ron C, Pellegrino Renata, Shockley Keith R, Romer Micah, Tufik Sergio, Pack Allan I: Sleep is not just for the brain: transcriptional responses to sleep in peripheral tissues. BMC genomics 14 : 362,2013.
Schwartz BL, Anafi RC, Aliyeva M, Thompson-Figueroa JA, Allen GB, Lundblad LKA, Bates JHT: Effects of central airway shunting on the mechanical impedance of the mouse lung Annals of Biomedical Engineering 39 (1): 497-507,2011.
Anafi RC, Bates JHT: Balancing robustness against the dangers of multiple attractors in a Hopfield-type model of biological attractors PLoS One 5 (12): e14413,2010.