Anafi Ron C, Francey Lauren J, Hogenesch John B: CYCLOPS reveals human transcriptional rhythms in health and disease. Proceedings of the National Academy of Sciences of the United States of America : 2017.
Krishnaiah Saikumari Y, Wu Gang, Altman Brian J, Growe Jacqueline, Rhoades Seth D, Coldren Faith, Venkataraman Anand, Olarerin-George Anthony O, Francey Lauren J, Mukherjee Sarmistha, Girish Saiveda, Selby Christopher P, Cal Sibel, Er Ubeydullah, Sianati Bahareh, Sengupta Arjun, Anafi Ron C, Kavakli I Halil, Sancar Aziz, Baur Joseph A, Dang Chi V, Hogenesch John B: Clock Regulation of Metabolites Reveals Coupling between Transcription and Metabolism. Cell metabolism 25 (4): 961-974.e4,2017.
Wu G, Anafi RC, Hughes ME, Kornacker K: MetaCycle: an integrated R package to evaluate periodicity in large scale data. Bioinformatics 32 (21): 3351-3353,2016.
Zhang Ray, Podtelezhnikov Alexei A, Hogenesch John B: Discovering Biology in Periodic Data through Phase Set Enrichment Analysis (PSEA). Journal of biological rhythms 31 (3): 244-57,2016.
Arnardottir Erna S, Nikonova Elena V, Shockley Keith R, Podtelezhnikov Alexei A, Anafi Ron C, Tanis Keith Q, Maislin Greg, Stone David J, Renger John J, Winrow Christopher J: Blood-gene expression reveals reduced circadian rhythmicity in individuals resistant to sleep deprivation. Sleep 37 (10): 1589-600,2014.
Anafi Ron C, Lee Yool, Sato Trey K, Venkataraman Anand, Ramanathan Chidambaram, Kavakli Ibrahim H, Hughes Michael E, Baggs Julie E, Growe Jacqueline, Liu Andrew C, Kim Junhyong: Machine learning helps identify CHRONO as a circadian clock component. PLoS biology 12 (4): e1001840,2014.
Deckard Anastasia, Anafi Ron C, Hogenesch John B, Haase Steven B: Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data. Bioinformatics (Oxford, England) 29 (24): 3174-80,2013.
Anafi Ron C, Pellegrino Renata, Shockley Keith R, Romer Micah, Tufik Sergio: Sleep is not just for the brain: transcriptional responses to sleep in peripheral tissues. BMC genomics 14 : 362,2013.
Schwartz BL, Anafi RC, Aliyeva M, Thompson-Figueroa JA, Allen GB, Lundblad LKA: Effects of central airway shunting on the mechanical impedance of the mouse lung Annals of Biomedical Engineering 39 (1): 497-507,2011.
Anafi RC: Balancing robustness against the dangers of multiple attractors in a Hopfield-type model of biological attractors PLoS One 5 (12): e14413,2010.