Description of Research Expertise:
microbial ecology; next-generation sequencing; respiratory tract microbiome; ventilator-associated infection; Clostridium difficile infection
Selected Publications:
Fuller RV, Fitzpatrick R, Lautenbach E, Pegues DA, Kelly BJ: Increasing Frequency of Subglottic Suctioning During Mechanical Ventilation Anticipates Adverse Ventilator-Associated Events ASM Microbe 2017 : 2017.
Kelly BJ, Lewis JD, Wu GD, Bushman FD: Longitudinal Metagenomic Analysis of Stool Bacterial Community Composition Detects Incident Extended-Spectrum Beta-Lactamases Associated with Antibiotic Treatment ASM Microbe 2017 : 2017.
Kelly BJ, Lautenbach E, Nachamkin I, Coffin SE, Gerber JS, Fuchs Garrigan C, Han X, Bilker WB, Wise J, Tolomeo P, Han JH, for the Centers for Disease Control and Prevention (CDC) Prevention Epicenters Program: Combined Biomarkers Discriminate Mortality Risk Among Critically Ill Patients with Suspected Sepsis ID Week 2016 : 2016.
Kelly BJ, Lautenbach E, Nachamkin I, Coffin SE, Gerber JS, Fuchs BD, Garrigan C, Han X, Bilker WB, Wise J, Tolomeo P, Han JH, Centers for Disease Control and Prevention (CDC) Prevention Epicenters Program: Combined biomarkers discriminate a low likelihood of bacterial infection among surgical intensive care unit patients with suspected sepsis Diagn Microbiol Infect Dis 85 (1): 109-15,2016.
Kelly BJ, Imai I, Bittinger K, Laughlin A, Fuchs BD, Bushman FD, Collman RG: Composition and dynamics of the respiratory tract microbiome in intubated patients Microbiome 4 : 7,2016.
Kelly BJ, Gross R, Bittinger K, Sherrill-Mix S, Lewis JD, Collman RG, Bushman FD, Li H: Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA Bioinformatics 31 (15): 2461-8,2015.
Brady T, Kelly BJ, Male F, Roth S, Bailey A, Malani N, Gijsbers R, O'Doherty U, Bushman FD: Quantitation of HIV DNA integration: effects of differential integration site distributions on Alu-PCR assays J Virol Methods 189 (1): 53-7,2013.
Khiabanian H, Holmes AB, Kelly BJ, Gururaj M, Hripcsak G, Rabadan R: Signs of the 2009 influenza pandemic in the New York-Presbyterian Hospital electronic health records PLoS One 5 (9): pii: e12658,2010.
Yu M, Kumar TRS, Nkrumah LJ, Coppi A, Retzlaff S, Li Celeste D, Kelly BJ, Moura PA, Lakshmanan V, Freundlich JS, Valderramos J-C, Vilcheze C, Siedner M, Tsai JH-C, Falkard B, Sidhu ABS, Purcell LA, Gratraud P, Kremer L, Waters AP, Schiehser G, Jacobus DP, Janse CJ, Ager A, Jacobs WR, Sacchettini JC, Heussler V, Sinnis P, Fidock DA: The fatty acid biosynthesis enzyme FabI plays a key role in the development of liver-stage malarial parasites Cell Host & Microbe 4 (6): 567-78,2008.
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