Vikram Vasan, Lovely Raghav, Malay Sannigrahi, Robert Brody, Alexander Lin, John Nicholas Lukens, Lova Sun, Iain M Morgan, Ahmed Diab, Jalal Jalaly, Devraj Basu Defining the clinical and biologic implications of HPV genome state variability among oropharyngeal cancers using transcriptomic analysis
, ASCO: 2026
Sujani Madabhushi ∙ Jalal Jalaly ∙ Salvatore Priore ∙ Portia Kreiger Calcifying Nested Stromal-Epithelial Tumor of the Liver: A Pilot Study Using Next Generation Sequencing of Microdissected Stromal and Epithelial Components , USCAP: 2026
Basu D, Sannigrahi MK, Raghav L, Rajagopalan P, Brody R, Jalaly J, Gallant JN Evidence of a role for oropharyngeal cancer cells with low HPV gene expression in treatment failure , Journal of Clinical Oncology (ASCO): 2025
Hieromnimon HM, Trzcinska A, Wen F, Howard FM, Dolezal JM, Dyer E, Kochanny S, Schulte J, Wang C, Chen H, Chin J, …, Jalaly JB, et al Interpretable HPV detection in head and neck cancer using foundation models and synthetic digital pathology , Cancer Research: 2025
Sannigrahi MK, Raghav L, Rich DJ, Schrank TP, Califano JA, Lukens JN, Sun L, Morgan IM, Cohen RB, Lin A, Liu X…, Jalaly JB, et al Tumor-intrinsic and immune-related features associated with treatment failure in human papillomavirus-related oropharyngeal cancer , JNCI: Journal of the National Cancer Institute: 2025
Hieromnimon HM, Trzcinska A, Wen FT, Howard FM, Dolezal JM, Dyer E, Kochanny S, Schulte JJ, Wang C, Chen H, Chin J, Blair E, Agrawal N, Rosenberg A, Vokes E, Katipally R, Juloori A, Izumchenko E, Lingen MW, Cipriani N, Jalaly JB, Basu D, Riesenfeld SJ, Pearson AT Analysis of AI foundation model features decodes the histopathologic landscape of HPV-positive head and neck squamous cell carcinomas , Oral Oncology, 163: 2025
JN Gallant, Jalaly JB, Basu Dev Molecular etiology and clinical significance of discordant HPV testing in p16+ oropharyngeal cancers , JCO: 2025
Jalaly JB MMP11 as a Prognostic Indicator for Inverted Papilloma Histologic Grade and Recurrence , The Laryngoscope: 2025
Rossi ED, Agarwal S, Erkilic S, Hang JF, Jalaly JB, Khanafshar E, Ladenheim A, Baloch Z Psammoma bodies in thyroid: are they always indicative of malignancy? A multi-institutional study , Virchows Archiv, 485: 2024
Sannigrahi, Malay K., ..., Jalaly JB, et al Association of oropharyngeal cancer recurrence with tumor-intrinsic and immune-mediated sequelae of reduced genomic instability. , bioRxiv: 2024