Sannigrahi MK, Raghav L, Rich DJ, Schrank TP, Califano JA, Lukens JN, Sun L, Morgan IM, Cohen RB, Lin A, Liu X, Brown EJ, You J, Mirabello L, Mishra SK, Shimunov D, Brody RM, Pearson AT, Gimotty PA, Diab A, Jalaly JB, Basu D. Tumor-intrinsic and immune-related features associated with treatment failure in HPV-related oropharyngeal cancer , JNCI, 117(7): 2025
Sannigrahi MK, Raghav L, Diab A, Basu D. The imprint of viral oncoproteins on the variable clinical behavior among human papilloma virus-related oropharyngeal squamous cell carcinomas , Tumour Virus Res., 18: 2024
James CD, Otoa1 RO, Youssef AH, Fontan CT, Sannigrahi MK, Windle B, Basu D, Morgan IM HPV16 genome structure analysis in oropharyngeal cancer PDXs identifies tumors with integrated and episomal genomes , Tumor Virus Res, 18: 2024
Sannigrahi M, Cao AC, Rajagopalan R, Sun L, Brody RM, Raghav L, Gimotty PA, Basu D A novel pipeline for prioritizing cancer type-specific therapeutic vulnerabilities using DepMap identifies PAK2 as a target in head and neck squamous cell carcinomas , Molecular Oncology, 18(2): 2024,336-339
Sannigrahi MK, Rajagopalan P, Lai L, Liu X, Sahu V, Nakagawa H, Jalaly JB, Brody RM, Morgan IM, Windle BE, Wang X, Gimotty PA, Kelly DP, White EA, Basu D HPV E6 regulates therapy responses in oropharyngeal cancer by repressing the PGC-1alpha/ERRalpha axis , JCI Insight, 7(18): 2022
Brody RM, Shimunov D, Cohen RB, Lukens JN, Hartner L, Aggarwal C, Duvvuri U, Montone KT, Jalaly J, LiVolsi VA, Carey RM, Shanti RM, Rajasekaran K, Chalian AA, Rassekh H, Cannady SB, Newman JG, Basu D A benchmark for oncologic outcomes and model for lethal recurrence risk
after transoral robotic resection of HPV-related oropharyngeal cancers , Oral Oncology, 127: 2022
Hatterschide J, Castagnino P, Kim HW, Sperry SM, Montone KT, Basu D, White EA YAP1 activation by human papillomavirus E7 promotes basal cell identity in squamous epithelia , eLife, 16: 2022,e75466
Facompre ND, Rajagopalan P, Sahu V, Pearson AT, Montone KT, James CD, Gleber-Netto FO, Weinstein GS, Jalaly J, Lin A, Rustgi AK, Nakagawa H, Califano JA, Pickering CR, White EA, Windle BE, Morgan IM, Cohen RB, Gimotty PA, Basu D. Identifying predictors of HPV-related head and neck squamous cell carcinoma progression and survival through patient-derived models. , Int J Cancer, 147(11): 2020
Harmeyer KM, Facompre ND, Herlyn M, Basu D JARID1 Histone Demethylases: Emerging Targets in Cancer , Trends Cancer, 3(10): 2017,713-725
Facompre ND, Harmeyer KM, Sole X, Kabraji S, Belden Z, Sahu V, Whelan K, Tanaka K, Weinstein GS, Montone KT, Roesch A, Gimotty PA, Herlyn M, Rustgi AK, Nakagawa H, Ramaswamy S, Basu D JARID1B Enables Transit between Distinct States of the Stem-like Cell Population in Oral Cancers , Cancer Res, 76(18): 2016,5538-49