Selected Publications
Li Y, Li H, Fan Y: ACEnet: Anatomical Context-Encoding Network for Neuroanatomy Segmentation Med Image Anal 70 (101991): 1-12,2021.
Li H, Fan Y: MDReg-Net: Multi-resolution diffeomorphic image registration using fully convolutional networks with deep self-supervision Hum Brain Mapp 43 (7): 2218-2231,2022.
Jiao Z, Li H, Xiao Y, Aggarwal C, Galperin-Aizenberg M, Pryma D, Simone CB 2nd, Feigenberg SJ, Kao GD, Fan Y: Integration of Risk Survival Measures Estimated From Pre- and Posttreatment Computed Tomography Scans Improves Stratification of Patients With Early-Stage Non-small Cell Lung Cancer Treated With Stereotactic Body Radiation Therapy Int J Radiat Oncol Biol Phys 109 (5): 1647-1656,2021.
Yin S, Peng Q, Li H, Zhang Z, You X, Fischer K, Furth SL, Fan Y, Tasian GE: Multi-instance Deep Learning of Ultrasound Imaging Data for Pattern Classification of Congenital Abnormalities of the Kidney and Urinary Tract in Children Urology 142 : 183-189,2020.
Zheng Q, Itkin M, Fan Y: Quantification of Thoracic Lymphatic Flow Patterns Using Dynamic Contrast-enhanced MR Lymphangiography Radiology 296 (1): 202-207,2020.
Liu H, Li H, Habes M, Li Y, Boimel P, Janopaul-Naylor J, Xiao Y, Ben-Josef E, Fan Y: Robust Collaborative Clustering of Subjects and Radiomic Features for Cancer Prognosis IEEE Trans Biomed Eng 67 (10): 2735-2744,2020.
Smith AL, Weissbart SJ, Hartigan SM, Bilello M, Newman DK, Wein AJ, Malykhina AP, Erus G, Fan Y: Association between urinary symptom severity and white matter plaque distribution in women with multiple sclerosis Neurourol Urodyn 39 (1): 339-346,2020.
Li H, Fan Y: Interpretable, highly accurate brain decoding of subtly distinct brain states from functional MRI using intrinsic functional networks and long short-term memory recurrent neural networks Neuroimage 202 (116059): 1-11,2019.
Yin S, Peng Q, Li H, Zhang Z, You X, Fischer K, Furth SL, Tasian GE, Fan Y: Automatic kidney segmentation in ultrasound images using subsequent boundary distance regression and pixelwise classification networks Med Image Anal 60 (101602): 1-14,2020.
Jing R, Li P, Ding Z, Lin X, Zhao R, Shi L, Yan H, Liao J, Zhuo C, Lu L, Fan Y: Machine learning identifies unaffected first-degree relatives with functional network patterns and cognitive impairment similar to those of schizophrenia patients Hum Brain Mapp 40 (13): 3930-3939,2019.
Li H, Habes M, Wolk DA, Fan Y: A deep learning model for early prediction of Alzheimer's disease dementia based on hippocampal magnetic resonance imaging data Alzheimers Dement 15 (8): 1059-1070,2019.
Wetherill RR, Rao H, Hager N, Wang J, Franklin TR, Fan Y: Classifying and characterizing nicotine use disorder with high accuracy using machine learning and resting-state fMRI Addict Biol 24 (4): 811-821,2019.
Li H, Galperin-Aizenberg M, Pryma D, Simone CB 2nd, Fan Y: Unsupervised machine learning of radiomic features for predicting treatment response and overall survival of early stage non-small cell lung cancer patients treated with stereotactic body radiation therapy Radiother Oncol 129 (2): 218-226,2018.
Zhu X, Zhang W, Fan Y: A Robust Reduced Rank Graph Regression Method for Neuroimaging Genetic Analysis Neuroinformatics 16 (3-4): 351-361,2018.
Zhao X, Wu Y, Song G, Li Z, Zhang Y, Fan Y: A deep learning model integrating FCNNs and CRFs for brain tumor segmentation Med Image Anal 43 : 98-111,2018.
Pines AR, Larsen B, Cui Z, Sydnor VJ, Bertolero MA, Adebimpe A, Alexander-Bloch AF, Davatzikos C, Fair DA, Gur RC, Gur RE, Li H, Milham MP, Moore TM, Murtha K, Parkes L, Thompson-Schill SL, Shanmugan S, Shinohara RT, Weinstein SM, Bassett DS, Fan Y, Satterthwaite TD: Dissociable multi-scale patterns of development in personalized brain networks Nat Commun 13 (1): 2647: 1-15,2022.
Jiao Z, Li H, Xiao Y, Dorsey J, Simone CB, Feigenberg S, Kao G, Fan Y: Integration of deep learning radiomics and counts of circulating tumor cells improves prediction of outcomes of early stage NSCLC patients treated with SBRT Int J Radiat Oncol Biol Phys 112 (4): 1045-1054,2022.
Cui Z, Li H, Xia CH, Larsen B, Adebimpe A, Baum GL, Cieslak M, Gur RE, Gur RC, Moore TM, Oathes DJ, Alexander-Bloch AF, Raznahan A, Roalf DR, Shinohara RT, Wolf DH, Davatzikos C, Bassett DS, Fair DA, Fan Y, Satterthwaite TD: Individual Variation in Functional Topography of Association Networks in Youth Neuron 106 (2): 340-353.e8,2020.
Cheng H, Gao L, Hou B, Feng F, Guo X, Wang Z, Feng M, Xing B, Fan Y: Reversibility of cerebral blood flow in patients with Cushing's disease after surgery treatment Metabolism 104 (154050): 1-7,2020.
Li P, Jing RX, Zhao RJ, Shi L, Sun HQ, Ding Z, Lin X, Lu L, Fan Y: Association between functional and structural connectivity of the corticostriatal network in people with schizophrenia and unaffected first-degree relatives J Psychiatry Neurosci 45 (6): 395-405,2020.
Jing R, Han Y, Cheng H, Han Y, Wang K, Weintraub D, Fan Y: Altered large-scale functional brain networks in neurological Wilson's disease Brain Imaging Behav 14 (5): 1445-1455,2020.
Zheng Q, Furth SL, Tasian GE, Fan Y: Computer-aided diagnosis of congenital abnormalities of the kidney and urinary tract in children based on ultrasound imaging data by integrating texture image features and deep transfer learning image features J Pediatr Urol 15 (1): 75.e1-75.e7,2019.
Li H, Satterthwaite TD, Fan Y: Large-scale sparse functional networks from resting state fMRI Neuroimage 156 : 1-13,2017.
Zhu H, Cheng H, Yang X, Fan Y: Metric Learning for Multi-atlas based Segmentation of Hippocampus Neuroinformatics 15 (1): 41–50,2017.
Han Y, Cheng H, Toledo JB, Wang X, Li B, Han Y, Wang K, Fan Y: Impaired functional default mode network in patients with mild neurological Wilson's disease Parkinsonism Relat Disord 30 : 46-51,2016.
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Academic Contact Information
Department of Radiology
Perelman School of Medicine
University of Pennsylvania
Richards Building, 7th floor
3700 Hamilton Walk
Philadelphia,
PA
19104-6116
Phone: 215-746-4065